Blog (17)#
Annotating 3D images in napari#
[‘Mara Lampert’]
Tags: Python, Napari, Bioimage Analysis
Content type: Blog
https://focalplane.biologists.com/2023/03/30/annotating-3d-images-in-napari/
Browsing the Open Microscopy Image Data Resource with Python#
[‘Robert Haase’]
Licensed CC-BY-4.0
Tags: Omero, Python
Content type: Blog
https://biapol.github.io/blog/robert_haase/browsing_idr/readme.html
Collaborative bio-image analysis script editing with git#
[‘Robert Haase’]
Licensed CC-BY-4.0
Introduction to version control using git for collaborative, reproducible script editing.
Tags: Sharing, Research Data Management
Content type: Blog
Data handling in large-scale electron microscopy#
[‘Job Fermie’]
Tags: Research Data Management
Content type: Blog
https://blog.delmic.com/data-handling-in-large-scale-electron-microscopy
Feature extraction in napari#
[‘Mara Lampert’]
Tags: Python, Napari, Bioimage Analysis
Content type: Blog
https://focalplane.biologists.com/2023/05/03/feature-extraction-in-napari/
Getting started with Mambaforge and Python#
[‘Mara Lampert’]
Licensed CC-BY-4.0
Tags: Python, Conda, Mamba
Content type: Blog
https://biapol.github.io/blog/mara_lampert/getting_started_with_mambaforge_and_python/readme.html
How to write a bug report#
[‘Mara Lampert’]
Tags: Github, Python, Science Communication
Content type: Blog
https://focalplane.biologists.com/2024/04/03/how-to-write-a-bug-report/
If you license it, it’ll be harder to steal it. Why we should license our work#
[‘Robert Haase’]
Licensed CC-BY-4.0
Blog post about why we should license our work and what is important when choosing a license.
Tags: Licensing, Research Data Management
Content type: Blog
Managing Scientific Python environments using Conda, Mamba and friends#
[‘Robert Haase’]
Licensed CC-BY-4.0
Tags: Python, Conda, Mamba
Content type: Blog
Promoting Data Management at the Nikon Imaging Center and Cell Biology Microscopy Facility#
[‘Jennifer Waters’]
Tags: Research Data Management
Content type: Blog
Prompt Engineering in Bio-image Analysis#
[‘Mara Lampert’]
Tags: Python, Jupyter, Bioimage Analysis, Prompt Engineering, Biabob
Content type: Blog
https://focalplane.biologists.com/2024/07/18/prompt-engineering-in-bio-image-analysis/
Quality assurance of segmentation results#
[‘Mara Lampert’]
Tags: Python, Napari, Bioimage Analysis
Content type: Blog
https://focalplane.biologists.com/2023/04/13/quality-assurance-of-segmentation-results/
Rescaling images and pixel (an)isotropy#
[‘Mara Lampert’]
Tags: Python, Napari, Bioimage Analysis
Content type: Blog
https://focalplane.biologists.com/2023/03/02/rescaling-images-and-pixel-anisotropy/
Running Deep-Learning Scripts in the BiA-PoL Omero Server#
[‘Marcelo Zoccoler’]
Licensed CC-BY-4.0
Tags: Python, Artificial Intelligence, Bioimage Analysis
Content type: Blog
https://biapol.github.io/blog/marcelo_zoccoler/omero_scripts/readme.html
Tracking in napari#
[‘Mara Lampert’]
Tags: Python, Napari, Bioimage Analysis
Content type: Blog
https://focalplane.biologists.com/2023/06/01/tracking-in-napari/