Neubias (27)#
Adding a Workflow to BIAFLOWS#
Sébastien Tosi, Volker Baecker, Benjamin Pavie
Licensed BSD-2-CLAUSE
Tags: Neubias, Bioimage Analysis
Content type: Slides
BioImage Data Analysis#
Kota Miura
Licensed ALL RIGHTS RESERVED
Tags: Neubias, Bioimage Analysis
Content type: Book
https://analyticalscience.wiley.com/do/10.1002/was.00050003/full/bioimagedataanalysis.pdf
CellProfiler Introduction#
Anna Klemm
Licensed UNKNOWN
Tags: Neubias, Cellprofiler, Bioimage Analysis
Content type: Slides
CellProfiler Practical NeuBIAS Lisbon 2017#
Carolina Wählby, Maxime Bombrun, Christian Tischer
Licensed UNKNOWN
Tags: Neubias, Cellprofiler, Bioimage Analysis
Content type: Tutorial
Developing open-source software for bioimage analysis: opportunities and challenges#
Florian Levet, Anne E. Carpenter, Kevin W. Eliceiri, Anna Kreshuk, Peter Bankhead, Robert Haase
Licensed CC-BY-4.0
This article outlines common challenges and practices when developing open-source software for bio-image analysis.
Tags: Neubias
Content type: Publication
EuBIAS course 2013: Intensity Dynamics at the Periphery of Nucleus#
Kota Miura
Published 2013
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Tutorial, Book
Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists#
Gabriel G. Martins, Fabrice P. Cordelières, Julien Colombelli, Rocco D’Antuono, Ofra Golani, Romain Guiet, Robert Haase, Anna H. Klemm, Marion Louveaux, Perrine Paul-Gilloteaux, Jean-Yves Tinevez, Kota Miura
Published 2021
Licensed CC-BY-4.0
Tags: Bioimage Analysis, Neubias
Content type: Publication
Image Analysis Training Resources#
Licensed CC-BY-4.0
Tags: Neubias, Bioimage Analysis
Content type: Book
ImageJ Macro Introduction#
Anna Klemm
Licensed UNKNOWN
Tags: Neubias, Imagej Macro, Bioimage Analysis
Content type: Slides, Code
ImageJ2 API-beating#
Robert Haase
Licensed BSD-3-CLAUSE
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slides
Jupyter for interactive cloud computing#
Guillaume Witz
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Slides
Machine and Deep Learning on the cloud: Segmentation#
Ignacio Arganda-Carreras
Licensed UNKNOWN
Tags: Neubias, Artificial Intelligence, Bioimage Analysis
Content type: Slides
Modular training resources for bioimage analysis#
Christian Tischer, Antonio Politi, Tim-Oliver Buchholz, Elnaz Fazeli, Nicola Gritti, Aliaksandr Halavatyi, Sebastian Gonzalez Tirado, Julian Hennies, Toby Hodges, Arif Khan, Dominik Kutra, Stefania Marcotti, Bugra Oezdemir, Felix Schneider, Martin Schorb, Anniek Stokkermans, Yi Sun, Nima Vakili
Published 2024-12-03
Licensed CC-BY-4.0
Resources for teaching/preparing to teach bioimage analysis
Tags: Neubias, Bioimage Analysis
Multi-view fusion#
Robert Haase
Licensed BSD-3-CLAUSE
Lecture slides of a session on Multiview Fusion in Fiji
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slides
https://git.mpi-cbg.de/rhaase/lecture_multiview_registration
NEUBIAS Academy @HOME: Interactive Bioimage Analysis with Python and Jupyter#
Licensed BSD-3-CLAUSE
Tags: Python, Neubias, Bioimage Analysis
Content type: Notebook
NEUBIAS Analyst School 2018#
Assaf Zaritsky, Csaba Molnar, Vasja Urbancic, Richard Butler, Anna Kreshuk, Vannary Meas-Yedid
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Slides, Code, Notebook
NEUBIAS Bioimage Analyst Course 2017#
Curtis Rueden, Florian Levet, J.B. Sibarta, Alexandre Dafour, Daniel Sage, Sebastien Tosi, Michal Kozubek, Jean-Yves Tinevez, Kota Miura, et al.
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Slides, Tutorial
NEUBIAS Bioimage Analyst School 2019#
Kota Miura, Chong Zhang, Jean-Yves Tinevez, Robert Haase, Julius Hossein, Pejamn Rasti, David Rousseau, Ignacio Arganda-Carreras, Siân Culley, et al.
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Slides, Code, Notebook
NEUBIAS Bioimage Analyst School 2020#
Marion Louveaux, Stéphane Verger, Arianne Bercowsky Rama, Ignacio Arganda-Carreras, Estibaliz Gómez-de-Mariscal, Kota Miura, et al.
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Slides, Code, Notebook
NEUBIAS YouTube Channel#
A collection of bio-image analysis webinars where commonly authors of open-source bio-image analysis software explain how to use their tools.
Tags: Neubias
Content type: Collection, Video
Neubias Academy 2020: Introduction to Nuclei Segmentation with StarDist#
Martin Weigert, Olivier Burri, Siân Culley, Uwe Schmidt
Licensed UNKNOWN
Tags: Python, Neubias, Artificial Intelligence, Bioimage Analysis
Content type: Slides, Notebook
Open Image Data Handbook#
Kevin Yamauchi
Licensed CC-BY-4.0
Tags: Neubias, Research Data Management, Napari, Python, Bioimage Analysis
Content type: Book, Notebook
Scripts_FilopodyanR - a case study for the NEUBIAS TS7 in Szeged#
Marion Louveaux
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Code
Tracking Theory, TrackMate, and Mastodon#
Robert Haase
Licensed BSD-3-CLAUSE
Lecture slides of a session on Cell Tracking in Fiji
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slides
What is Bioimage Analysis? An Introduction#
Kota Miura
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Slides
https://www.dropbox.com/s/5abw3cvxrhpobg4/20220923_DefragmentationTS.pdf?dl=0
Working with objects in 2D and 3D#
Robert Haase
Licensed BSD-3-CLAUSE
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slides
https://git.mpi-cbg.de/rhaase/lecture_working_with_objects_in_2d_and_3d
Working with pixels#
Robert Haase
Licensed BSD-3-CLAUSE
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slides
https://git.mpi-cbg.de/rhaase/lecture_working_with_pixels