Neubias (26)#
Adding a Workflow to BIAFLOWS#
[‘Sébastien Tosi’, ‘Volker Baecker’, ‘Benjamin Pavie’]
Licensed BSD-2-CLAUSE
Tags: Neubias, Bioimage Analysis
Content type: Slide
BioImage Data Analysis#
[‘Kota Miura’]
Licensed ALL RIGHTS RESERVED
Tags: Neubias, Bioimage Analysis
Content type: Book
https://analyticalscience.wiley.com/do/10.1002/was.00050003/full/bioimagedataanalysis.pdf
CellProfiler Introduction#
[‘Anna Klemm’]
Licensed UNKNOWN
Tags: Neubias, Cellprofiler, Bioimage Analysis
Content type: Slide
CellProfiler Practical NeuBIAS Lisbon 2017#
[‘Carolina Wählby’, ‘Maxime Bombrun’, ‘Christian Tischer’]
Licensed UNKNOWN
Tags: Neubias, Cellprofiler, Bioimage Analysis
Content type: Tutorial
Developing open-source software for bioimage analysis: opportunities and challenges#
[‘Florian Levet’, ‘Anne E. Carpenter’, ‘Kevin W. Eliceiri’, ‘Anna Kreshuk’, ‘Peter Bankhead’, ‘Robert Haase’]
Licensed CC-BY-4.0
This article outlines common challenges and practices when developing open-source software for bio-image analysis.
Tags: Neubias
Content type: Publication
EuBIAS course 2013: Intensity Dynamics at the Periphery of Nucleus#
[‘Kota Miura’]
Published 2013
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Tutorial, Book
Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists#
[‘Gabriel G. Martins’, ‘Fabrice P. Cordelières’, ‘Julien Colombelli’, ‘Rocco D’Antuono’, ‘Ofra Golani’, ‘Romain Guiet’, ‘Robert Haase’, ‘Anna H. Klemm’, ‘Marion Louveaux’, ‘Perrine Paul-Gilloteaux’, ‘Jean-Yves Tinevez’, ‘Kota Miura’]
Published 2021
Licensed CC-BY-4.0
Tags: Bioimage Analysis, Neubias
Content type: Publication
Image Analysis Training Resources#
Licensed CC-BY-4.0
Tags: Neubias, Bioimage Analysis
Content type: Book
ImageJ Macro Introduction#
[‘Anna Klemm’]
Licensed UNKNOWN
Tags: Neubias, Imagej Macro, Bioimage Analysis
Content type: Slide, Code
ImageJ2 API-beating#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
Jupyter for interactive cloud computing#
[‘Guillaume Witz’]
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Slide
Machine and Deep Learning on the cloud: Segmentation#
[‘Ignacio Arganda-Carreras’]
Licensed UNKNOWN
Tags: Neubias, Artificial Intelligence, Bioimage Analysis
Content type: Slide
Multi-view fusion#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Lecture slides of a session on Multiview Fusion in Fiji
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
https://git.mpi-cbg.de/rhaase/lecture_multiview_registration
NEUBIAS Academy @HOME: Interactive Bioimage Analysis with Python and Jupyter#
Licensed BSD-3-CLAUSE
Tags: Python, Neubias, Bioimage Analysis
Content type: Notebook
NEUBIAS Analyst School 2018#
[‘Assaf Zaritsky’, ‘Csaba Molnar’, ‘Vasja Urbancic’, ‘Richard Butler’, ‘Anna Kreshuk’, ‘Vannary Meas-Yedid’]
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Slide, Code, Notebook
NEUBIAS Bioimage Analyst Course 2017#
[‘Curtis Rueden’, ‘Florian Levet’, ‘J.B. Sibarta’, ‘Alexandre Dafour’, ‘Daniel Sage’, ‘Sebastien Tosi’, ‘Michal Kozubek’, ‘Jean-Yves Tinevez’, ‘Kota Miura’, ‘et al.’]
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Slide, Tutorial
NEUBIAS Bioimage Analyst School 2019#
[‘Kota Miura’, ‘Chong Zhang’, ‘Jean-Yves Tinevez’, ‘Robert Haase’, ‘Julius Hossein’, ‘Pejamn Rasti’, ‘David Rousseau’, ‘Ignacio Arganda-Carreras’, ‘Siân Culley’, ‘et al.’]
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Slide, Code, Notebook
NEUBIAS Bioimage Analyst School 2020#
[‘Marion Louveaux’, ‘Stéphane Verger’, ‘Arianne Bercowsky Rama’, ‘Ignacio Arganda-Carreras’, ‘Estibaliz Gómez-de-Mariscal’, ‘Kota Miura’, ‘et al.’]
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Slide, Code, Notebook
NEUBIAS YouTube Channel#
A collection of bio-image analysis webinars where commonly authors of open-source bio-image analysis software explain how to use their tools.
Tags: Neubias
Content type: Collection, Video
Neubias Academy 2020: Introduction to Nuclei Segmentation with StarDist#
[‘Martin Weigert’, ‘Olivier Burri’, ‘Siân Culley’, ‘Uwe Schmidt’]
Licensed UNKNOWN
Tags: Python, Neubias, Artificial Intelligence, Bioimage Analysis
Content type: Slide, Notebook
Open Image Data Handbook#
[‘Kevin Yamauchi’]
Licensed CC-BY-4.0
Tags: Neubias, Research Data Management, Napari, Python, Bioimage Analysis
Content type: Book, Notebook
Scripts_FilopodyanR - a case study for the NEUBIAS TS7 in Szeged#
[‘Marion Louveaux’]
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Code
Tracking Theory, TrackMate, and Mastodon#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Lecture slides of a session on Cell Tracking in Fiji
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
What is Bioimage Analysis? An Introduction#
[‘Kota Miura’]
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Slide
https://www.dropbox.com/s/5abw3cvxrhpobg4/20220923_DefragmentationTS.pdf?dl=0
Working with objects in 2D and 3D#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
https://git.mpi-cbg.de/rhaase/lecture_working_with_objects_in_2d_and_3d
Working with pixels#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
https://git.mpi-cbg.de/rhaase/lecture_working_with_pixels