Online tutorial (10)#
Creating Workflows and Advanced Workflow Options#
Licensed CC-BY-4.0
Tags: Workflow
Content type: Tutorial, Online Tutorial
Data Stewardship Wizard#
Licensed UNKOWN
Leading open-source platform for collaborative and living data management plans.
Tags: Data Stewardship, Open Source, Research Data Management, FAIR-Principles
Content type: Website, Online Tutorial
Data life cycle#
ELIXIR (2021) Research Data Management Kit
Licensed CC-BY-4.0
In this section, information is organised according to the stages of the research data life cycle.
Tags: Data Life Cycle, Research Data Management
Content type: Collection, Website, Online Tutorial
EPFLx: Image Processing and Analysis for Life Scientists#
Licensed ALL RIGHTS RESERVED
Tags: Bioimage Analysis
Content type: Online Tutorial
Fiji#
Licensed BSD-2-CLAUSE
Fiji is a popular free open-source image processing package based on ImageJ.
Tags: Imagej, OMERO
Content type: Online Tutorial
https://omero-guides.readthedocs.io/en/latest/fiji/docs/index.html
Galaxy workflows#
Licensed CC0-1.0
A workflow is a chain of analysis steps. In Galaxy, we can create a workflow from an existing analysis history, or we can create one visually by adding tools to a canvas. This tutorial covers building a workflow to analyse a bacterial genome, from input FASTQ sequencing reads to assembly, annotation, and visualization.
Tags: Workflow
Content type: Online Tutorial, Tutorial
https://galaxy-au-training.github.io/tutorials/modules/workflows/
KNIME Image Processing#
None
Licensed GPLV3
The KNIME Image Processing Extension allows you to read in more than 140 different kinds of images and to apply well known methods on images, like preprocessing. segmentation, feature extraction, tracking and classification in KNIME.
Tags: Imagej, OMERO, Bioimage Data, Workflow
Content type: Tutorial, Online Tutorial, Documentation
Methods in bioimage analysis#
Christian Tischer
Licensed CC-BY-4.0
Tags: Bioimage Analysis
Content type: Online Tutorial, Video, Slide
https://www.ebi.ac.uk/training/events/methods-bioimage-analysis/
https://doi.org/10.6019/TOL.BioImageAnalysis22-w.2022.00001.1
https://drive.google.com/file/d/1MhuqfKhZcYu3bchWMqogIybKjamU5Msg/view
OMERO - QuPath#
Rémy Jean Daniel Dornier
Licensed [‘CC-BY-NC-SA-4.0’]
OMERO-RAW extension for QuPath allows to directly access to the raw pixels of images. All types of images (RGB, fluorescence, …) are supported with this extension.
Tags: Bioimage Analysis, OMERO
Content type: Online Tutorial
RDMO - Research Data Management Organiser#
Licensed UNKNOWN
Der Research Data Management Organiser (RDMO) unterstützt Forschungsprojekte bei der Planung, Umsetzung und Verwaltung aller Aufgaben des Forschungsdatenmanagements.
Tags: Research Data Management, Open Source Software
Content type: Website, Online Tutorial
https://rdmorganiser.github.io/