Focalplane.biologists.com (13)#

Annotating 3D images in napari#

Mara Lampert

Tags: Python, Napari, Bioimage Analysis

Content type: Blog

https://focalplane.biologists.com/2023/03/30/annotating-3d-images-in-napari/


Collaborative bio-image analysis script editing with git#

Robert Haase

Licensed CC-BY-4.0

Introduction to version control using git for collaborative, reproducible script editing.

Tags: Sharing, Research Data Management

Content type: Blog

https://focalplane.biologists.com/2021/09/04/collaborative-bio-image-analysis-script-editing-with-git/


Creating a Research Data Management Plan using chatGPT#

Robert Haase

Published 2023-11-06

Licensed CC-BY-4.0

In this blog post the author demonstrates how chatGPT can be used to combine a fictive project description with a DMP specification to produce a project-specific DMP.

Tags: Research Data Management, Large Language Models, Artificial Intelligence

Content type: Blog

https://focalplane.biologists.com/2023/11/06/creating-a-research-data-management-plan-using-chatgpt/


Feature extraction in napari#

Mara Lampert

Tags: Python, Napari, Bioimage Analysis

Content type: Blog

https://focalplane.biologists.com/2023/05/03/feature-extraction-in-napari/


How to write a bug report#

Mara Lampert

Tags: Github, Python, Science Communication

Content type: Blog

https://focalplane.biologists.com/2024/04/03/how-to-write-a-bug-report/


If you license it, it’ll be harder to steal it. Why we should license our work#

Robert Haase

Licensed CC-BY-4.0

Blog post about why we should license our work and what is important when choosing a license.

Tags: Licensing, Research Data Management

Content type: Blog

https://focalplane.biologists.com/2023/05/06/if-you-license-it-itll-be-harder-to-steal-it-why-we-should-license-our-work/


Managing Scientific Python environments using Conda, Mamba and friends#

Robert Haase

Licensed CC-BY-4.0

Tags: Python, Conda, Mamba

Content type: Blog

https://focalplane.biologists.com/2022/12/08/managing-scientific-python-environments-using-conda-mamba-and-friends/


Prompt Engineering in Bio-image Analysis#

Mara Lampert

Tags: Python, Jupyter, Bioimage Analysis, Prompt Engineering, Biabob

Content type: Blog

https://focalplane.biologists.com/2024/07/18/prompt-engineering-in-bio-image-analysis/


Quality assurance of segmentation results#

Mara Lampert

Tags: Python, Napari, Bioimage Analysis

Content type: Blog

https://focalplane.biologists.com/2023/04/13/quality-assurance-of-segmentation-results/


Rescaling images and pixel (an)isotropy#

Mara Lampert

Tags: Python, Napari, Bioimage Analysis

Content type: Blog

https://focalplane.biologists.com/2023/03/02/rescaling-images-and-pixel-anisotropy/


Sharing Your Poster on Figshare: A Community Guide to How-To and Why#

Elisabeth Kugler

Tags: Sharing, Research Data Management

Content type: Blog

https://focalplane.biologists.com/2023/07/26/sharing-your-poster-on-figshare/


Sharing research data with Zenodo#

Robert Haase

Licensed CC-BY-4.0

Blog post about how to share data using zenodo.org

Tags: Sharing, Research Data Management

Content type: Blog

https://focalplane.biologists.com/2023/02/15/sharing-research-data-with-zenodo/


Tracking in napari#

Mara Lampert

Tags: Python, Napari, Bioimage Analysis

Content type: Blog

https://focalplane.biologists.com/2023/06/01/tracking-in-napari/