Cc0-1.0 (13)#
A Fiji Scripting Tutorial#
Albert Cardona
Licensed CC0-1.0
Tags: Imagej, Bioimage Analysis
Content type: Notebook
Andor Dragonfly confocal image of BPAE cells stained for actin, IMS file format#
Hoku West-Foyle
Published 2025-01-16
Licensed CC0-1.0
BioImage Archive AI Gallery#
Licensed CC0-1.0
Tags: Bioimage Analysis, Artificial Intelligence
Content type: Collection, Data
BioImage Archive Visual Gallery#
Licensed CC0-1.0
Tags: Bioimage Analysis
Content type: Collection, Data
https://www.ebi.ac.uk/bioimage-archive/galleries/visualisation.html
BioImage Archive Volume EM Gallery#
Licensed CC0-1.0
Tags: Bioimage Analysis
Content type: Collection, Data
Checklists for publishing images and image analysis#
Christopher Schmied
Published 2023-09-14
Licensed CC0-1.0
In this paper we introduce two sets of checklists. One is concerned with the publication of images. The other one gives instructions for the publication of image analysis.
Tags: Bioimage Analysis
Content type: Forum Post
https://forum.image.sc/t/checklists-for-publishing-images-and-image-analysis/86304
Galaxy workflows#
Licensed CC0-1.0
A workflow is a chain of analysis steps. In Galaxy, we can create a workflow from an existing analysis history, or we can create one visually by adding tools to a canvas. This tutorial covers building a workflow to analyse a bacterial genome, from input FASTQ sequencing reads to assembly, annotation, and visualization.
Tags: Workflow
Content type: Online Tutorial, Tutorial
https://galaxy-au-training.github.io/tutorials/modules/workflows/
Image-based Profiling Handbook#
Beth Cimini, Tim Becker, Shantanu Singh, Gregory Way, Hamdah Abbasi, Callum Tromans-Coia
Licensed CC0-1.0
Tags: Bioimage Analysis
Content type: Book
Ink in a dish#
Cavanagh
Published 2024-09-03
Licensed CC0-1.0
A test data set for troublshooting. no scientific meaning.
Online_R_learning#
C. Li
Published 2023-07-09T06:27:14+00:00
Licensed CC0-1.0
Online R learning for applied statistics
Tags: Statistics
Content type: Github Repository
REMBI Overview#
Licensed CC0-1.0
Recommended Metadata for Biological Images (REMBI) provides guidelines for metadata for biological images to enable the FAIR sharing of scientific data.
Tags: FAIR-Principles, Metadata, Research Data Management
Content type: Collection
Statistical Rethinking#
Richard McElreath
Published 2024-03-01
Licensed CC0-1.0
This course teaches data analysis, but it focuses on scientific models. The unfortunate truth about data is that nothing much can be done with it, until we say what caused it. We will prioritize conceptual, causal models and precise questions about those models. We will use Bayesian data analysis to connect scientific models to evidence. And we will learn powerful computational tools for coping with high-dimension, imperfect data of the kind that biologists and social scientists face.
Tags: Statistics
Content type: Github Repository
Submitting data to the BioImage Archive#
Licensed CC0-1.0
To submit, you’ll need to register an account, organise and upload your data, prepare a file list, and then submit using our web submission form. These steps are explained here.
Tags: Research Data Management
Content type: Tutorial, Video
https://www.ebi.ac.uk/bioimage-archive/submit/