Cc0-1.0 (10)

Cc0-1.0 (10)#

A Fiji Scripting Tutorial#

Albert Cardona

Licensed CC0-1.0

Tags: Imagej, Bioimage Analysis

Content type: Notebook

https://syn.mrc-lmb.cam.ac.uk/acardona/fiji-tutorial/

Checklists for publishing images and image analysis#

Christopher Schmied

Published 2023-09-14

Licensed CC0-1.0

In this paper we introduce two sets of checklists. One is concerned with the publication of images. The other one gives instructions for the publication of image analysis.

Tags: Bioimage Data, Microscopy Image Analysis

Content type: Forum Post

https://forum.image.sc/t/checklists-for-publishing-images-and-image-analysis/86304

Galaxy workflows#

Licensed CC0-1.0

A workflow is a chain of analysis steps. In Galaxy, we can create a workflow from an existing analysis history, or we can create one visually by adding tools to a canvas. This tutorial covers building a workflow to analyse a bacterial genome, from input FASTQ sequencing reads to assembly, annotation, and visualization.

Tags: Workflow

Content type: Online Tutorial, Tutorial

https://galaxy-au-training.github.io/tutorials/modules/workflows/

Image-based Profiling Handbook#

Beth Cimini, Tim Becker, Shantanu Singh, Gregory Way, Hamdah Abbasi, Callum Tromans-Coia

Licensed CC0-1.0

Tags: Bioimage Analysis

Content type: Book

cytomining/profiling-handbook

https://cytomining.github.io/profiling-handbook/

Online_R_learning#

C. Li

Published 2023-07-09T06:27:14+00:00

Licensed CC0-1.0

Online R learning for applied statistics

Tags: Statistics

Content type: Github Repository

cxli233/Online_R_learning

REMBI Overview#

Licensed CC0-1.0

Recommended Metadata for Biological Images (REMBI) provides guidelines for metadata for biological images to enable the FAIR sharing of scientific data.

Tags: FAIR-Principles, Metadata, Image Data Management, Research Data Management, Bioimage Data

Content type: Collection

https://www.ebi.ac.uk/bioimage-archive/rembi-help-overview/

Submitting data to the BioImage Archive#

Licensed CC0-1.0

To submit, you’ll need to register an account, organise and upload your data, prepare a file list, and then submit using our web submission form. These steps are explained here.

Tags: Research Data Management, Image Data Management, Bioimage Data

Content type: Tutorial, Video

https://www.ebi.ac.uk/bioimage-archive/submit/