Gpl-2.0 (7)#
NGFF Converter#
Licensed GPL-2.0
An easy to use and open source converter for bioimaging data. NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF.
Tags: Bioimage Data, Open Source Software
Content type: Application
ONBI Image Analysis Course#
Mark Jenkinson, Jens Rittscher, Dominic Waithe
Licensed GPL-2.0
This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course.
Tags: Python, Bioimage Analysis
Content type: Notebook
Plugin “omero-batch-plugin”#
Licensed GPL-2.0
An ImageJ plugin to run a script or macro on a batch of images from/to OMERO.
Tags: OMERO, Imagej, Imagej Macro, Github
Content type: Github Repository
Plugin “omero-cli-transfer”#
Erick Martins Ratamero, Jean-Marie Burel, Will Moore, Guillaume Gay, Christoph Moehl, et al.
Published 2024-09-14
Licensed GPL-2.0
An OMERO CLI plugin for creating and using transfer packets between OMERO servers.
Tags: OMERO
Content type: Github Repository
Plugin “simple-omero-client”#
Pierre Pouchin, Rdornier, kekunn, Jean-Marie Burel
Licensed GPL-2.0
A wrapper library which can be called from scripts in Fiji, but can mostly be used in Maven projects to wrap calls to the underlying OMERO Java Gateway.
Tags: OMERO, Github, Fiji
Content type: Github Repository
bioformats2raw Converter#
Melissa Linkert, Chris Allan, Josh Moore, Sébastien Besson, David Gault, et al.
Licensed GPL-2.0
Java application to convert image file formats, including .mrxs, to an intermediate Zarr structure compatible with the OME-NGFF specification.
Tags: Open Source Software, Bioimage Data
Content type: Application, Github Repository
raw2ometiff Converter#
Melissa Linkert, Chris Allan, Sébastien Besson, Josh Moore
Licensed GPL-2.0
Java application to convert a directory of tiles to an OME-TIFF pyramid. This is the second half of iSyntax/.mrxs => OME-TIFF conversion.
Tags: Open Source Software, Bioimage Data
Content type: Application, Github Repository