Gpl-2.0 (7)#

NGFF Converter#

Licensed GPL-2.0

An easy to use and open source converter for bioimaging data. NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF.

Tags: Bioimage Data, Open Source Software

Content type: Application

https://www.glencoesoftware.com/products/ngff-converter/


ONBI Image Analysis Course#

Mark Jenkinson, Jens Rittscher, Dominic Waithe

Licensed GPL-2.0

This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course.

Tags: Python, Bioimage Analysis

Content type: Notebook

dwaithe/ONBI_image_analysis


Plugin “omero-batch-plugin”#

Licensed GPL-2.0

An ImageJ plugin to run a script or macro on a batch of images from/to OMERO.

Tags: OMERO, Imagej, Imagej Macro, Github

Content type: Github Repository

GReD-Clermont/omero_batch-plugin


Plugin “omero-cli-transfer”#

Erick Martins Ratamero, Jean-Marie Burel, Will Moore, Guillaume Gay, Christoph Moehl, et al.

Published 2024-09-14

Licensed GPL-2.0

An OMERO CLI plugin for creating and using transfer packets between OMERO servers.

Tags: OMERO

Content type: Github Repository

ome/omero-cli-transfer


Plugin “simple-omero-client”#

Pierre Pouchin, Rdornier, kekunn, Jean-Marie Burel

Licensed GPL-2.0

A wrapper library which can be called from scripts in Fiji, but can mostly be used in Maven projects to wrap calls to the underlying OMERO Java Gateway.

Tags: OMERO, Github, Fiji

Content type: Github Repository

GReD-Clermont/simple-omero-client


bioformats2raw Converter#

Melissa Linkert, Chris Allan, Josh Moore, Sébastien Besson, David Gault, et al.

Licensed GPL-2.0

Java application to convert image file formats, including .mrxs, to an intermediate Zarr structure compatible with the OME-NGFF specification.

Tags: Open Source Software, Bioimage Data

Content type: Application, Github Repository

glencoesoftware/bioformats2raw


raw2ometiff Converter#

Melissa Linkert, Chris Allan, Sébastien Besson, Josh Moore

Licensed GPL-2.0

Java application to convert a directory of tiles to an OME-TIFF pyramid. This is the second half of iSyntax/.mrxs => OME-TIFF conversion.

Tags: Open Source Software, Bioimage Data

Content type: Application, Github Repository

glencoesoftware/raw2ometiff