Bsd-3-clause (16)#
2020 BioImage Analysis Survey: Community experiences and needs for the future#
[‘Nasim Jamali’, ‘Ellen T. A. Dobson’, ‘Kevin W. Eliceiri’, ‘Anne E. Carpenter’, ‘Beth A. Cimini’]
Published 2021
Licensed BSD-3-CLAUSE
Tags: Bioimage Analysis
Content type: Publication
A biologist’s guide to planning and performing quantitative bioimaging experiments#
[‘Rebecca A. Senft’, ‘Barbara Diaz-Rohrer’, ‘Pina Colarusso’, ‘Lucy Swift’, ‘Nasim Jamali’, ‘Helena Jambor’, ‘Thomas Pengo’, ‘Craig Brideau’, ‘Paula Montero Llopis’, ‘Virginie Uhlmann’, ‘Jason Kirk’, ‘Kevin Andrew Gonzales’, ‘Peter Bankhead’, ‘Edward L. Evans III’, ‘Kevin W. Eliceiri’, ‘Beth A. Cimini’]
Licensed BSD-3-CLAUSE
Content type: Collection, Publication
BioImage Analysis Notebooks#
[‘Robert Haase et al.’]
Licensed [‘CC-BY-4.0’, ‘BSD-3-CLAUSE’]
Tags: Python, Bioimage Analysis
Content type: Book, Notebook
https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/intro.html
Bridging Imaging Users to Imaging Analysis - A community survey#
[‘Suganya Sivagurunathan’, ‘Stefania Marcotti’, ‘Carl J Nelson’, ‘Martin L Jones’, ‘David J Barry’, ‘Thomas J A Slater’, ‘Kevin W Eliceiri’, ‘Beth A Cimini’]
Published 2023
Licensed BSD-3-CLAUSE
Tags: Bioimage Analysis
Content type: Publication, Preprint
CellProfiler tutorials#
Licensed BSD-3-CLAUSE
CellProfiler tutorials and guided exercises about translocation, segmentation, pixel-based classification and quality control
Tags: Cellprofiler, Bioimage Analysis
Content type: Notebook
Fundamentals of image analysis in Python with scikit-image, napari, and friends#
[‘Juan Nunez-Iglesias’]
Licensed BSD-3-CLAUSE
Tags: Python, Bioimage Analysis
Content type: Notebook
Image analysis and visualization in Python with scikit-image, napari, and friends#
[‘Juan Nunez-Iglesias’]
Licensed BSD-3-CLAUSE
Tags: Python, Bioimage Analysis
Content type: Notebook
Image processing for beginners#
[‘Guillaume Witz’]
Licensed BSD-3-CLAUSE
Tags: Python, Bioimage Analysis
Content type: Notebook
ImageJ2 API-beating#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
Multi-view fusion#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Lecture slides of a session on Multiview Fusion in Fiji
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
https://git.mpi-cbg.de/rhaase/lecture_multiview_registration
NEUBIAS Academy @HOME: Interactive Bioimage Analysis with Python and Jupyter#
Licensed BSD-3-CLAUSE
Tags: Python, Neubias, Bioimage Analysis
Content type: Notebook
NeubiasPasteur2023_AdvancedCellPose#
[‘Gaelle Letort’]
Licensed BSD-3-CLAUSE
Tutorial for running CellPose advanced functions
Tags: Cellpose, Segmentation
Content type: Github Repository
Tracking Theory, TrackMate, and Mastodon#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Lecture slides of a session on Cell Tracking in Fiji
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
Working with objects in 2D and 3D#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
https://git.mpi-cbg.de/rhaase/lecture_working_with_objects_in_2d_and_3d
Working with pixels#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
numpy pandas course#
[‘Guillaume Witz’]
Licensed BSD-3-CLAUSE
Tags: Python
Content type: Notebook