Training.galaxyproject.org (5)#
EMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data#
Jullia Jakiela, Laura Cooper, Katarzyna Kamieniecka, Krzysztof Poterlowicz
Published 2025-02-05
Licensed CC-BY-4.0 INTERNATIONAL
The objective is to organise bioimage metadata, find out what REMBI is and why it is useful, categorise what metadata belongs to each of the submodules of REMBI and gather the metadata for an example bioimage dataset.
Tags: Bioinformatics, Bioimage Analysis
Content type: Tutorial
End-to-End Tissue Microarray Image Analysis with Galaxy-ME#
Cameron Watson, Allison Creason
Published 2023-02-14
Licensed CC-BY-4.0
This tutorial will demonstrate how to use the Galaxy multiplex imaging tools to process and analyze publicly available TMA test data provided by MCMICRO (Figure 1); however, the majority of the steps in this tutorial are the same for both TMAs and WSIs and notes are made throughout the tutorial where processing of these two imaging types diverge.
Tags: Galaxy, Multiplex Imaging
Content type: Tutorial
Galaxy Training#
Published None
Licensed CC-BY-4.0
Collection of tutorials developed and maintained by the worldwide Galaxy community.
Tags: Bioimage Analysis, Data Analysis
Content type: Collection, Tutorial
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy#
Riccardo Massei, Björn Grüning
Published 2024-12-02
Licensed CC-BY-4.0
Tags: OMERO, Galaxy, Metadata, Nfdi4Bioimage
Content type: Tutorial, Framework, Workflow
Tracking of mitochondria and capturing mitoflashes#
Leonid Kostrykin, Diana Chiang Jurado
Published 2024-11-20
Licensed CC-BY-4.0
Tags: Bioinformatics, Bioimage Analysis
Content type: Workflow, Tutorial