Artificial intelligence (29)#
AI ML DL in Bioimage Analysis - Webinar#
Yannick KREMPP
Published 2024-11-14
Licensed UNKNOWN
A review of the tools, methods and concepts useful for biologists and life scientists as well as bioimage analysts.
Tags: Deep Learning, Machine Learning, Artificial Intelligence, Bioimage Analysis, Large Language Models
Content type: Youtube Video, Slides, Webinar
AI4Life teams up with Galaxy Training Network (GTN) to enhance training resources#
Caterina Fuster-Barceló
Licensed UNKNOWN
Tags: Artificial Intelligence, Workflow Engine, Bioimage Analysis
Content type: Documentation
BioEngine#
Jeremy Metz, Beatriz Serrano-Solano, Wei Ouyang
Licensed UNKNOWN
BioEnging is a cloud infrastructure to run BioImage model zoo based workflows in the cloud.
Tags: Artificial Intelligence, Workflow Engine
Content type: Publication
Bioimage Model Zoo#
Licensed UNKNOWN
Tags: Bioimage Analysis, Artificial Intelligence
Content type: Collection
Building a Bioimage Analysis Workflow using Deep Learning#
Estibaliz Gómez-de-Mariscal\
Licensed UNKNOWN
Tags: Artificial Intelligence, Bioimage Analysis
Content type: Slide
CARE/Stardist tutorials for EMBO Practical Course — Computational optical biology 2022#
Martin Weigert
Licensed UNKNOWN
Tags: Python, Artificial Intelligence, Bioimage Analysis
Content type: Notebook
CSBDeep and StarDist @ I2K 2020#
Martin Weigert, Uwe Schmidt
Licensed UNKNOWN
Tags: Python, Artificial Intelligence, Bioimage Analysis
Content type: Notebook
Collection of teaching material for deep learning for (biomedical) image analysis#
Constantin Pape
Licensed MIT
Tags: Artificial Intelligence, Bioimage Analysis
Course on Deep Learning for imaging using PyTorch#
Guillaume Witz
Licensed UNKNOWN
Tags: Python, Bioimage Analysis, Artificial Intelligence
Content type: Notebook
Creating a Research Data Management Plan using chatGPT#
Robert Haase
Published 2023-11-06
Licensed CC-BY-4.0
In this blog post the author demonstrates how chatGPT can be used to combine a fictive project description with a DMP specification to produce a project-specific DMP.
Tags: Research Data Management, Large Language Models, Artificial Intelligence
Content type: Blog
https://focalplane.biologists.com/2023/11/06/creating-a-research-data-management-plan-using-chatgpt/
DEEP NAPARI : Napari as a tool for deep learning project management#
Herearii Metuarea, David Rousseau, Pejman Rasti, Valentin Gilet
Licensed UNKNOWN
Tags: Artificial Intelligence, Bioimage Analysis
Content type: Notebook
DL@MBL 2021 Exercises#
Jan Funke, Constantin Pape, Morgan Schwartz, Xiaoyan
Licensed UNKNOWN
Tags: Artificial Intelligence, Bioimage Analysis
Content type: Slide, Notebook
Deep Learning Based Segmentation For Biologists#
Licensed AGPL-3.0
Tags: Python, R, Artificial Intelligence
Content type: Notebook
Deep Learning for image analysis - Exercises#
Martin Weigert
Licensed UNKNOWN
Tags: Fiji, Artificial Intelligence, Bioimage Analysis
Content type: Notebook
Deep Vision and Graphics#
Victor Yurchenko, Fedor Ratnikov, Viktoriia Checkalina
Licensed MIT
Tags: Python, Artificial Intelligence
Content type: Notebook
DeepProfiler Handbook#
Michael Bornholdt, Juan Caicedo, Yu Han, Nikita Moshkov, Rebecca Senft
Licensed UNKNOWN
Tags: Artificial Intelligence, Bioimage Analysis
Content type: Book
cytomining/DeepProfiler-handbook
https://cytomining.github.io/DeepProfiler-handbook/docs/00-welcome.html
EMBL Deep Learning course 2019 exercises and materials#
Valentyna Zinchenko, Pejman Rasti, Martin Weigert, Szymon Stoma
Licensed UNKNOWN
Tags: Python, Artificial Intelligence
Content type: Notebook
EMBL Deep Learning course 2021/22 exercises and materials#
Martin Weigert, Constantin Pape
Licensed UNKNOWN
Tags: Python, Artificial Intelligence
Content type: Notebook
EMBL Deep Learning course 2023 exercises and materials#
Martin Weigert, Uwe Schmidt, Benjamin Gallusser, Albert Dominguez Mantes, Buglakova Alyona
Licensed UNKNOWN
Tags: Python, Artificial Intelligence
Content type: Notebook
Generative artificial intelligence for bio-image analysis#
Robert Haase
Licensed CC-BY-4.0
Tags: Python, Bioimage Analysis, Artificial Intelligence
Content type: Slide
Kreshuk Lab’s EMBL EIPP predoc course teaching material#
Adrian Wolny, Johannes Hugger, Qin Yu, Buglakova Alyona
Licensed UNKNOWN
Tags: Artificial Intelligence
Content type: Tutorial
Machine Learning - Deep Learning. Applications to Bioimage Analysis#
Estibaliz Gómez-de-Mariscal
Licensed UNKNOWN
Tags: Artificial Intelligence, Bioimage Analysis
Content type: Slide
Machine and Deep Learning on the cloud: Segmentation#
Ignacio Arganda-Carreras
Licensed UNKNOWN
Tags: Neubias, Artificial Intelligence, Bioimage Analysis
Content type: Slide
Neubias Academy 2020: Introduction to Nuclei Segmentation with StarDist#
Martin Weigert, Olivier Burri, Siân Culley, Uwe Schmidt
Licensed UNKNOWN
Tags: Python, Neubias, Artificial Intelligence, Bioimage Analysis
Content type: Slide, Notebook
Running Deep-Learning Scripts in the BiA-PoL Omero Server#
Marcelo Zoccoler
Licensed CC-BY-4.0
Tags: Python, Artificial Intelligence, Bioimage Analysis
Content type: Blog
https://biapol.github.io/blog/marcelo_zoccoler/omero_scripts/readme.html
Training Deep Learning Models for Vision - Compact Course#
Constantin Pape, Adrian Wolny
Licensed UNKNOWN
Tags: Artificial Intelligence, Bioimage Analysis
ZIDAS 2020 Introduction to Deep Learning#
Estibaliz Gómez-de-Mariscal
Licensed UNKNOWN
Tags: Artificial Intelligence, Bioimage Analysis
Content type: Slide
ilastik: interactive machine learning for (bio)image analysis#
Anna Kreshuk, Dominik Kutra
Licensed CC-BY-4.0
Tags: Artificial Intelligence, Bioimage Analysis
Content type: Slide
introduction-to-generative-ai#
Bruna Piereck, Alexander Botzki
Published 2024-09-27T14:38:51+00:00
Licensed CC-BY-4.0
Course repository for Strategic Use of Generative AI
Tags: Artificial Intelligence
Content type: Github Repository, Tutorial
vibbits/introduction-to-generative-ai