Www.ebi.ac.uk (10)#

Bioimage Archive#

Content type: Collection, Data, Publication

https://www.ebi.ac.uk/bioimage-archive/

https://www.sciencedirect.com/science/article/abs/pii/S0022283622000791

EMBL-EBI material collection#

EMBL-EBI

Licensed CC0 (MOSTLY, BUT CAN DIFFER DEPENDING ON RESOURCE)

Online tutorial and webinar library, designed and delivered by EMBL-EBI experts

Tags: Bioinformatics, Training

Content type: Collection

https://www.ebi.ac.uk/training/on-demand?facets=type:Course%20materials&query=

Finding and using publicly available data#

Anna Swan

Published 2024-01-01

Licensed CC-BY-4.0

Sharing knowledge and data in the life sciences allows us to learn from each other and built on what others have discovered. This collection of online courses brings together a variety of training, covering topics such as biocuration, open data, restricted access data and finding publicly available data, to help you discover and make the most of publicly available data in the life sciences.

Tags: Open Science, Teaching, Sharing

Content type: Collection, Tutorial, Videos

https://www.ebi.ac.uk/training/online/courses/finding-using-public-data/

Methods in bioimage analysis#

Christian Tischer

Licensed CC-BY-4.0

Tags: Bioimage Analysis

Content type: Online Tutorial, Video, Slide

https://www.ebi.ac.uk/training/events/methods-bioimage-analysis/

https://doi.org/10.6019/TOL.BioImageAnalysis22-w.2022.00001.1

https://drive.google.com/file/d/1MhuqfKhZcYu3bchWMqogIybKjamU5Msg/view

Microscopy data analysis: machine learning and the BioImage Archive#

Andrii Iudin, Anna Foix-Romero, Anna Kreshuk, Awais Athar, Beth Cimini, Dominik Kutra, Estibalis Gomez de Mariscal, Frances Wong, Guillaume Jacquemet, Kedar Narayan, Martin Weigert, Nodar Gogoberidze, Osman Salih, Petr Walczysko, Ryan Conrad, Simone Weyend, Sriram Sundar Somasundharam, Suganya Sivagurunathan, Ugis Sarkans

Licensed CC-BY-4.0

The Microscopy data analysis: machine learning and the BioImage Archive course, which focused on introducing programmatic approaches used in the analysis of bioimage data via the BioImage Archive, ran in May 2023.

Tags: Microscopy Image Analysis, Python, Deep Learning

Content type: Video, Slides

https://www.ebi.ac.uk/training/materials/microscopy-data-analysis-machine-learning-and-the-bioimage-archive-materials/

REMBI Overview#

Licensed CC0-1.0

Recommended Metadata for Biological Images (REMBI) provides guidelines for metadata for biological images to enable the FAIR sharing of scientific data.

Tags: FAIR-Principles, Metadata, Image Data Management, Research Data Management, Bioimage Data

Content type: Collection

https://www.ebi.ac.uk/bioimage-archive/rembi-help-overview/

Submitting data to the BioImage Archive#

Licensed CC0-1.0

To submit, you’ll need to register an account, organise and upload your data, prepare a file list, and then submit using our web submission form. These steps are explained here.

Tags: Research Data Management, Image Data Management, Bioimage Data

Content type: Tutorial, Video

https://www.ebi.ac.uk/bioimage-archive/submit/