Recently added (10)#

(Meta)data in Action - Developments in NFDI4BIOIMAGE and I3D:bio#

Susanne Kunis

Published 2025-10-23

Licensed CC-BY-4.0

This presentation gives a short overview of the outcome of the I3D:bio project and the ongoing developments in terms of data and metadata in the NFDI4BIOIMAGE consortium. Presented at the RDM4mic meeting in Münster, from Okt. 21-23, 2025

https://zenodo.org/records/17424911

https://doi.org/10.5281/zenodo.17424911


CellSens vsi file for testing metadata extraction of timeinterval#

Aafke Gros

Published 2025-11-12

Licensed CC-BY-4.0

https://zenodo.org/records/17590655

https://doi.org/10.5281/zenodo.17590655


GloBIAS Presentation at Latin America BioImaging Meeting#

Corbat, Agustin Andres

Published 2025-11-11

Licensed CC-BY-4.0

Presentation about the Global BioImage Analysts’ Society (GloBIAS) deliver at the LABI Meeting 2025 in Buenos Aires, Argentina.

https://zenodo.org/records/17632823

https://doi.org/10.5281/zenodo.17632823


GloBIAS: Strengthening the Foundations of Bioimage Analysis#

Corbat, Agustin Andres

Published 2025-11-10

Licensed CC-BY-4.0

Poster presented at LABI Meeting 2025: From Data to Discovery about the Global BioImage Analysts’ Society.

https://zenodo.org/records/17633744

https://doi.org/10.5281/zenodo.17633744


Howto organize your image data in OMERO#

Thomas Zobel, Carsten Fortmann-Grote

Published 2025-10-21

Licensed CC-BY-4.0

Material for the OMERO Training Workshop at MPI Evolutionary Biology, Dec. 7 & 8 2023

https://zenodo.org/records/17404133

https://doi.org/10.5281/zenodo.17404133


IMS image#

Pais de Azevedo, Tomás

Published 2025-10-21

Licensed CC-BY-4.0

Unsupported Imaris file. Exported from Imaris 9.9.1.

https://zenodo.org/records/17406102

https://doi.org/10.5281/zenodo.17406102


Knowledge Graphs for NFDI4BIOIMAGE#

Carsten Fortmann-Grote

Published 2025-10-16

Licensed CC-BY-4.0

Presentation in the FIZ-Karlsruhe “NFDICore Playground” Seminar on October 16 2025This work is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the National Research Data Infrastructure – NFDI 46/1 – 501864659

https://zenodo.org/records/17372593

https://doi.org/10.5281/zenodo.17372593


OME-Zarr and Next-Generational File Formats (NGFF)#

Josh Moore

Published 2025-07-02

Licensed CC-BY-4.0

Invited talk given to Zeiss

https://zenodo.org/records/17604591

https://doi.org/10.5281/zenodo.17604591


[Halfway-to-I2K 2025]: Introduction to ome-zarr and S3 cloud storage#

Soltwedel, Johannes Richard

Published 2025-11-18

Licensed CC-BY-4.0

Slides presented by Johannes Soltwedel at Halfway to I2K virtual conference 2025

https://zenodo.org/records/17639350

https://doi.org/10.5281/zenodo.17639350


openBIS for Evolutionary Biology#

Carsten Fortmann-Grote, Kristian Ullrich

Published 2025-09-24

Licensed CC-BY-4.0

Presentation given at the openBIS User Group Meeting on September 22nd 2025   This work is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the National Research Data Infrastructure – NFDI 46/1 – 501864659

https://zenodo.org/records/17191504

https://doi.org/10.5281/zenodo.17191504