Recently added (10)#
(Meta)data in Action - Developments in NFDI4BIOIMAGE and I3D:bio#
Susanne Kunis
Published 2025-10-23
Licensed CC-BY-4.0
This presentation gives a short overview of the outcome of the I3D:bio project and the ongoing developments in terms of data and metadata in the NFDI4BIOIMAGE consortium. Presented at the RDM4mic meeting in Münster, from Okt. 21-23, 2025
Howto organize your image data in OMERO#
Thomas Zobel, Carsten Fortmann-Grote
Published 2025-10-21
Licensed CC-BY-4.0
Material for the OMERO Training Workshop at MPI Evolutionary Biology, Dec. 7 & 8 2023
IMS image#
Pais de Azevedo, Tomás
Published 2025-10-21
Licensed CC-BY-4.0
Unsupported Imaris file. Exported from Imaris 9.9.1.
Knowledge Graphs for NFDI4BIOIMAGE#
Carsten Fortmann-Grote
Published 2025-10-16
Licensed CC-BY-4.0
Presentation in the FIZ-Karlsruhe “NFDICore Playground” Seminar on October 16 2025This work is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the National Research Data Infrastructure – NFDI 46/1 – 501864659
MetaFold - Template-Driven Desktop Tool to Sync, Enrich, and Automate Your Research Data#
Thomas Zobel
Published 2025-10-08
Licensed CC-BY-4.0
MetaFold simplifies laboratory data management through easy-to-use templates that create reproducible metadata.It reduces manual steps by automatically generating folder structures and metadata files at multiple locations simultaneously.Thanks to its integration with OMERO and ELNs, microscopy data can be automatically imported based on the existing metadata — saving researchers significant time and effort. Core functions
Template-based creation of project folders and metadata forms
Multi-user and group-level configuration
Secure credential storage and user authentication
Direct integrations with elabFTW (ELN) and OMERO (image data management)
Project discovery: recursive scan and visualization of existing data
Category system: customizable templates by project type
Road to OME-Zarr 1.0#
Josh Moore
Published 2025-11-10
Licensed CC-BY-4.0
Presented at the 2025 International OME-NGFF workshop. https://www.biovisioncenter.uzh.ch/en/events/Upcoming-Events/2025-OME-NGFF-workshop.html
Smart Slide Generation: Re-Using Training Materials Through the Power of LLMs#
Lea Kabjesz, Lea Gihlein, Lampert, Mara Harriet, Robert Haase
Published 2025-11-06
Licensed CC-BY-4.0
This record contains the poster “Smart Slide Generation: Re-Using Training Materials Through the Power of LLMs” presented by Lea Kabjesz and Lea Gihlein at the All Hands Meeting of the German AI Centers, held on 5th - 6th November 2025 at DFKI Saarbrücken, Germany. We acknowledge funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the National Research Data Infrastructure – NFDI 46/1 – 501864659.
The Power of Sharing: Open Data in Bio-image Analysis#
Frauke Beyer, Michaela Unger, Ronny Gey, Riccardo Massei, Cornelia Wetzker, Elena Nicolay, Lampert, Mara Harriet
Published 2025-10-24
Licensed CC-BY-4.0
The material supports the panel discussion about open data sharing with stories and info from the panelists. C.W. and R.M. are funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the National Research Data Infrastructure –NFDI46/1 – 501864659
[RDM4Mic2025] Data stewardship for Bio-Image Research Data Management Support and Training in NFDI4BIOIMAGE#
Cornelia Wetzker, Vanessa Fuchs, Jens Wendt, Mohsen Ahmadi, Müller, Maximilian E., Riccardo Massei
Published 2025-10-29
Licensed CC-BY-4.0
The consortium NFDI4BIOIMAGE is funded by DFG grant number NFDI 46/1, project number 501864659.
openBIS for Evolutionary Biology#
Carsten Fortmann-Grote, Kristian Ullrich
Published 2025-09-24
Licensed CC-BY-4.0
Presentation given at the openBIS User Group Meeting on September 22nd 2025 This work is funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the National Research Data Infrastructure – NFDI 46/1 – 501864659
https://zenodo.org/records/17191504
https://doi.org/10.5281/zenodo.17191504