Tutorial (16)#
CellProfiler Practical NeuBIAS Lisbon 2017#
[‘Carolina Wählby’, ‘Maxime Bombrun’, ‘Christian Tischer’]
Licensed UNKNOWN
Tags: Neubias, Cellprofiler, Bioimage Analysis
Content type: Tutorial
Data Carpentry for Biologists#
Licensed [‘CC-BY-4.0’, ‘MIT’]
Content type: Tutorial, Code
EuBIAS course 2013: Intensity Dynamics at the Periphery of Nucleus#
[‘Kota Miura’]
Published 2013
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Tutorial, Book
Euro-BioImaging’s Guide to FAIR BioImage Data - Practical Tasks#
[‘Isabel Kemmer’, ‘Euro-BioImaging ERIC’]
Published 2024-06-04
Licensed CC-BY-4.0
Hands-on exercises on FAIR Bioimage Data from the interactive online workshop “Euro-BioImaging’s Guide to FAIR BioImage Data 2024” (https://www.eurobioimaging.eu/news/a-guide-to-fair-bioimage-data-2024/). Types of tasks included: FAIR characteristics of a real world dataset Data Management Plan (DMP) Journal Policies on FAIR data sharing Ontology search Metadata according to REMBI scheme (Image from: Sarkans, U., Chiu, W., Collinson, L. et al. REMBI: Recommended Metadata for Biological Images—enabling reuse of microscopy data in biology. Nat Methods 18, 1418–1422 (2021). https://doi.org/10.1038/s41592-021-01166-8) Matching datasets to bioimage repositories Browsing bioimage repositories
Tags: Bioimage Analysis, Fair-Principles, Research Data Management
Content type: Slides, Tutorial
Euro-BioImaging’s Template for Research Data Management Plans#
[‘Isabel Kemmer’, ‘Euro-BioImaging ERIC’]
Published 2024-06-04
Licensed CC-BY-4.0
Euro-BioImaging has developed a Data Management Plan (DMP) template with questions tailored to bioimaging research projects. Outlining data management practices in this way ensures traceability of project data, allowing for a continuous and unambiguous flow of information throughout the research project. This template can be used to satisfy the requirement to submit a DMP to certain funders. Regardless of the funder, Euro-BioImaging users are encouraged to provide a DMP and can use this template accordingly. This DMP template is available as a fillable PDF with further instructions and sample responses available by hovering over the fillable fields.
Tags: Bioimage Analysis, Fair-Principles, Research Data Management
Content type: Collection, Tutorial
Galaxy Training Material#
Licensed MIT
Content type: Slides, Tutorial
Kreshuk Lab’s EMBL EIPP predoc course teaching material#
[‘Adrian Wolny’, ‘Johannes Hugger’, ‘Qin Yu’, ‘Buglakova Alyona’]
Licensed UNKNOWN
Tags: Artificial Intelligence
Content type: Tutorial
Machine Learning Workflow for Imaging Flow Cytometry (IFC)#
Licensed UNKNOWN
Tags: Cellprofiler, Bioimage Analysis
Content type: Tutorial
Making your project citable#
A tutorial explaining how to make Github repositories citable by automatically creating DOIs using the Github-Zenodo integration.
Tags: Sharing, Citing, Research Data Management
Content type: Tutorial
https://coderefinery.github.io/github-without-command-line/doi/
NEUBIAS Bioimage Analyst Course 2017#
[‘Curtis Rueden’, ‘Florian Levet’, ‘J.B. Sibarta’, ‘Alexandre Dafour’, ‘Daniel Sage’, ‘Sebastien Tosi’, ‘Michal Kozubek’, ‘Jean-Yves Tinevez’, ‘Kota Miura’, ‘et al.’]
Licensed UNKNOWN
Tags: Neubias, Bioimage Analysis
Content type: Slide, Tutorial
OME-Zarr course#
[‘Bugra Oezdemir’, ‘Christian Tischer’]
Licensed UNKNOWN
Content type: Tutorial
Setting up a remote desktop to use Napari in a browser#
[‘Volker Hilsenstein’]
Licensed UNKNOWN
Content type: Tutorial
Software Citation with CITATION.cff#
How to make your Github repository citable by adding a citation.cff file.
Tags: Sharing, Citing, Research Data Management
Content type: Tutorial
https://the-turing-way.netlify.app/communication/citable/citable-cff.html
Source Control Using Git and GitHub#
Licensed UNKNOWN
Content type: Tutorial
Teaching Bioimage Analysis with Python#
[‘Rafael Camacho’]
Licensed MIT
Tags: Python, Bioimage Analysis
Content type: Tutorial
Teaching ImageJ FIJI#
[‘Rafael Camacho’]
Licensed MIT
Tags: Fiji, Bioimage Analysis
Content type: Tutorial
CamachoDejay/Teaching-ImageJ-FIJI