Imagej (16)#
A Fiji Scripting Tutorial#
[‘Albert Cardona’]
Licensed CC0-1.0
Tags: Imagej, Bioimage Analysis
Content type: Notebook
A study on long-term reproducibility of image analysis results on ImageJ and Fiji#
[‘Robert Haase’, ‘Deborah Schmidt’, ‘Wayne Rasband’, ‘Curtis Rueden’, ‘Florian Jug’, ‘Pavel Tomancak’, ‘Eugene W. Myers’]
Tags: Imagej
Content type: Publication, Poster
https://figshare.com/articles/poster/I2K_Poster_Haase_V6_ImageJ_repro_pdf/7409525
CLIJ: GPU-accelerated image processing for everyone#
[‘Robert Haase’, ‘Loic Royer’, ‘et al.’]
Published 2020
Licensed ALL RIGHTS RESERVED
CLIJ is a collection of image processing functions that use graphics processing units for accelerated processing.
Tags: Imagej, Bioimage Analysis
Content type: Publication
ImageJ2 API-beating#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
Introduction to Bioimage Analysis#
[‘Pete Bankhead’]
Licensed CC-BY-4.0
Tags: Python, Imagej, Bioimage Analysis
Content type: Book, Notebook
Introduction to Image Analysis with Fiji#
[‘Robert Haase’, ‘Benoit Lombardot’]
Licensed CC-BY-NC-4.0
Tags: Imagej, Fiji, Bioimage Analysis
Introduction to ImageJ macro programming, Scientific Computing Facility, MPI CBG Dresden#
[‘Robert Haase’, ‘Benoit Lombardot’]
Licensed UNKNOWN
Tags: Imagej, Bioimage Analysis
Content type: Slide
JIPipe: visual batch processing for ImageJ#
[‘Ruman Gerst’, ‘Zoltán Cseresnyés’, ‘Marc Thilo Figge’]
JIPipe is an open-source visual programming language for easy-access pipeline development
Tags: Workflow Engine, Imagej
Content type: Publication, Documentation
Lecture Applied Bioimage Analysis 2020#
[‘Robert Haase’]
Slides, scripts, data and other exercise materials of the BioImage Analysis lecture at CMCB TU Dresden 2020
Tags: Imagej, Bioimage Analysis
Content type: Slide
https://git.mpi-cbg.de/rhaase/lecture_applied_bioimage_analysis
MiToBo - A Toolbox for Image Processing and Analysis#
[‘Birgit Möller’, ‘Markus Glaß’, ‘Danny Misiak’, ‘Stefan Posch’]
The Microscope Image Analysis Toolbox is a toolbox with a collection of algorithms for processing and analyzing digital images.
Tags: Workflow Engine, Imagej
Content type: Publication, Documentation
https://openresearchsoftware.metajnl.com/articles/10.5334/jors.103
ModularImageAnalysis (MIA): Assembly of modularisedimage and object analysis workflows in ImageJ#
[‘Stephen J. Cross’, ‘Jordan D. J. R. Fisher’, ‘Mark A. Jepson’]
ModularImageAnalysis is a Fiji plugin providing a modular framework for assembling image and object analysis workflows
Tags: Workflow Engine, Imagej
Content type: Publication, Documentation
Multi-view fusion#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Lecture slides of a session on Multiview Fusion in Fiji
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
https://git.mpi-cbg.de/rhaase/lecture_multiview_registration
The Fiji Updater#
[‘Robert Haase’]
Licensed ALL RIGHTS RESERVED
Article about the Fiji Updater explaining how it works in the background.
Tags: Imagej
Content type: Publication
https://analyticalscience.wiley.com/do/10.1002/was.0004000112/
Tracking Theory, TrackMate, and Mastodon#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Lecture slides of a session on Cell Tracking in Fiji
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
Working with objects in 2D and 3D#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
https://git.mpi-cbg.de/rhaase/lecture_working_with_objects_in_2d_and_3d
Working with pixels#
[‘Robert Haase’]
Licensed BSD-3-CLAUSE
Tags: Neubias, Imagej, Bioimage Analysis
Content type: Slide
https://git.mpi-cbg.de/rhaase/lecture_working_with_pixels