Www.youtube.com (20)#

AI ML DL in Bioimage Analysis - Webinar#

Yannick KREMPP

Published 2024-11-14

Licensed UNKNOWN

A review of the tools, methods and concepts useful for biologists and life scientists as well as bioimage analysts.

Tags: Deep Learning, Machine Learning, Artificial Intelligence, Bioimage Analysis, Large Language Models

Content type: Youtube Video, Slides, Webinar

https://www.youtube.com/watch?v=TJXNMIWtdac


Bio Image Analysis Lecture 2020#

Tags: Bioimage Analysis

Content type: Collection, Video

https://www.youtube.com/watch?v=e-2DbkUwKk4&list=PL5ESQNfM5lc7SAMstEu082ivW4BDMvd0U


COBA: Center for Open Bioimage Analysis YouTube Channel#

Tags: Bioimage Analysis

Content type: Collection, Video

https://www.youtube.com/@cobacenterforopenbioimagea1864


Chris Halvin YouTube channel#

Licensed UNKNOWN

Tags: Napari, Python, Bioimage Analysis

Content type: Collection, Video

https://www.youtube.com/@chrishavlin

https://www.youtube.com/playlist?list=PLqbhAmYZU5KxuAcnNBIxyBkivUEiKswq1


DigitalSreeni YouTube Channel#

Sreeni Bhattiprolu

A collection tutorial videos for using Python in general and for processing images using Python, machine learning and deep learning

Tags: Python

Content type: Collection, Video

https://www.youtube.com/digitalsreeni

https://www.youtube.com/watch?v=A4po9z61TME


Dr Guillaume Jacquemet on studying cancer cell metastasis in the era of deep learning for microscopy#

Guillaume Jacquemet

Published 2024-10-24

Licensed UNKNOWN

Leukocyte extravasation is a critical component of the innate immune response, while circulating tumour cell extravasation is a crucial step in metastasis formation. Despite their importance, these extravasation mechanisms remain incompletely understood. In this talk, Guillaume Jacquemet presents a novel imaging framework that integrates microfluidics with high-speed, label-free imaging to study the arrest of pancreatic cancer cells (PDAC) on human endothelial layers under physiological flow conditions.

Tags: Deep Learning, Microscopy Image Analysis

Content type: Youtube Video, Slides

https://www.youtube.com/watch?v=KTdZBgSCYJQ


Erick Martins Ratamero - Expanding the OME ecosystem for imaging data management | SciPy 2024#

SciPy, Erick Martins Ratamero

Published 2024-08-19

Licensed YOUTTUBE STANDARD LICENSE

Tags: Image Data Management, OMERO, Bioimage Analysis

Content type: Video, Presentation

https://www.youtube.com/watch?v=GmhyDNm1RsM


Euro-BioImaging Communication YouTube Channel#

Content type: Collection, Video

https://www.youtube.com/c/eurobioimagingcommunication


FAIR BioImage Data#

Licensed CC-BY-4.0

Tags: Research Data Management, Fair, Bioimage Analysis

Content type: Collection, Video

https://www.youtube.com/watch?v=8zd4KTy-oYI&list=PLW-oxncaXRqU4XqduJzwFHvWLF06PvdVm


Fiji Is Just ImageJ Tutorials#

Tags: Bioimage Analysis

Content type: Collection, Video

https://www.youtube.com/playlist?list=PL5Edc1v41fyCLFZbBCLo41zFO-_cXBfAb


Global BioImaging YouTube channel#

Content type: Collection, Video

https://www.youtube.com/GlobalBioImaging


How to get started with Jupyter and Colab#

Content type: Video

https://www.youtube.com/watch?v=OH3VKI7ErAE


I3D:bio’s OMERO training material: Re-usable, adjustable, multi-purpose slides for local user training#

Christian Schmidt, Michele Bortolomeazzi, Tom Boissonnet, Carsten Fortmann-Grote, Julia Dohle, Peter Zentis, Niraj Kandpal, Susanne Kunis, Thomas Zobel, Stefanie Weidtkamp-Peters, Elisa Ferrando-May

Published 2023-11-13

Licensed CC-BY-4.0

The open-source software OME Remote Objects (OMERO) is a data management software that allows storing, organizing, and annotating bioimaging/microscopy data. OMERO has become one of the best-known systems for bioimage data management in the bioimaging community. The Information Infrastructure for BioImage Data (I3D:bio) project facilitates the uptake of OMERO into research data management (RDM) practices at universities and research institutions in Germany. Since the adoption of OMERO into researchers’ daily routines requires intensive training, a broad portfolio of training resources for OMERO is an asset. On top of using the OMERO guides curated by the Open Microscopy Environment Consortium (OME) team, imaging core facility staff at institutions where OMERO is used often prepare additional material tailored to be applicable for their own OMERO instances. Based on experience gathered in the Research Data Management for Microscopy group (RDM4mic) in Germany, and in the use cases in the I3D:bio project, we created a set of reusable, adjustable, openly available slide decks to serve as the basis for tailored training lectures, video tutorials, and self-guided instruction manuals directed at beginners in using OMERO. The material is published as an open educational resource complementing the existing resources for OMERO contributed by the community.

Tags: OMERO, Research Data Management, Nfdi4Bioimage, I3Dbio

Content type: Slide, Video

https://zenodo.org/records/8323588

https://www.youtube.com/playlist?list=PL2k-L-zWPoR7SHjG1HhDIwLZj0MB_stlU

https://doi.org/10.5281/zenodo.8323588


Melbourne Advanced Microscopy Facility#

Collection of tutorial videos for Fiji users

Tags: Bioimage Analysis

Content type: Collection, Video

https://www.youtube.com/@melbourneadvancedmicroscop2617


NEUBIAS YouTube Channel#

A collection of bio-image analysis webinars where commonly authors of open-source bio-image analysis software explain how to use their tools.

Tags: Neubias

Content type: Collection, Video

https://www.youtube.com/neubias


Open Micoscropy Environment (OME) Youtube Channel#

Published None

Licensed CC-BY-4.0

OME develops open-source software and data format standards for the storage and manipulation of biological microscopy data

Tags: Open Source Software, Microscopy Image Analysis, Bioimage Data

Content type: Video, Collection

https://www.youtube.com/@OpenMicroscopyEnvironment


Open Microscopy Environment YouTube channel#

YouTube channel collecting videos and webinar recordings about the Open Microscopy Environment (OME), the Next Generation File Format OME-NGFF, the Image Data Resource (IDR), the Omero platform and Omero plugins.

Tags: OMERO

Content type: Collection, Video

https://www.youtube.com/OpenMicroscopyEnvironment


RDM4mic#

Licensed UNKNOWN

Tags: Research Data Management, OMERO

Content type: Collection, Video

https://www.youtube.com/@RDM4mic


RDMBites BioImage metadata#

Content type: Collection, Video

https://www.youtube.com/watch?v=aRHNHk07t3Q&list=PLyCNTVs-UBvuJF7WausQ5q7v7pI1vEpI1


arivis Vision4D Tutorials#

Licensed ALL RIGHTS RESERVED

Tags: Bioimage Analysis

Content type: Collection, Video

https://www.youtube.com/playlist?list=PLRc9dt9lEZh_SVRC4G5moOvgHuvjPwmv0