Segmentation (5)#

Image Processing with Python#

Mark Meysenburg, Toby Hodges, Dominik Kutra, Erin Becker, David Palmquist, et al.

Licensed CC-BY-4.0

This lesson shows how to use Python and scikit-image to do basic image processing.

Tags: Segmentation, Bioimage Analysis, Training, Python, Scikit-Image, Image Segmentation

Content type: Tutorial, Workflow

https://datacarpentry.org/image-processing/key-points.html


Introduction to Deep Learning for Microscopy#

Costantin Pape

Licensed MIT

This course consists of lectures and exercises that teach the background of deep learning for image analysis and show applications to classification and segmentation analysis problems.

Tags: Deep Learning, Pytorch, Segmentation, Python

Content type: Notebook

computational-cell-analytics/dl-for-micro


NeubiasPasteur2023_AdvancedCellPose#

Gaelle Letort

Licensed BSD-3-CLAUSE

Tutorial for running CellPose advanced functions

Tags: Cellpose, Segmentation

Content type: Github Repository

gletort/NeubiasPasteur2023_AdvancedCellPose


QI 2024 Analysis Lab Manual#

Beth Cimini, Florian Jug, QI 2024

Licensed CC-BY-4.0

This book contains the quantitative analysis labs for the QI CSHL course, 2024

Tags: Segmentation, Python

Content type: Notebook

https://bethac07.github.io/qi_2024_analysis_lab_manual/intro.html


Ultrack I2K 2024 Workshop Materials#

Jordão Bragantini, Teun Huijben

Licensed BSD3-CLAUSE

Tags: Segmentation, Bioimage Analysis, Training

Content type: Workshop, Github Repository, Tutorial

royerlab/ultrack-i2k2024

https://royerlab.github.io/ultrack-i2k2024/