Training (12)#
DataPLANT knowledge base#
Published 2022-12-14
Licensed CC-BY-4.0
Explore fundamental topics on research data management (RDM), how DataPLANT implements these aspects to support plant researchers with RDM tools and services, read guides and manuals or search for some teaching materials.
Tags: Research Data Management, Training, Dataplant
Content type: Collection
https://nfdi4plants.org/nfdi4plants.knowledgebase/index.html
Docker Mastery - with Kubernetes + Swarm from a Docker Captain#
Bret Fisher
Licensed UNKNOWN
In this course you will learn how to use Docker, Compose and Kubernetes on your machine for better software building and testing.
Tags: Docker, Training
Content type: Videos, Tutorial, Online Course
EMBL-EBI material collection#
EMBL-EBI
Licensed CC0 (MOSTLY, BUT CAN DIFFER DEPENDING ON RESOURCE)
Online tutorial and webinar library, designed and delivered by EMBL-EBI experts
Tags: Bioinformatics, Training
Content type: Collection
https://www.ebi.ac.uk/training/on-demand?facets=type:Course%20materials&query=
Glencoe Software Webinars#
Chris Allan, Emil Rozbicki
Licensed UNKNOWN
Example Workflows / usage of the Glencoe Software.
Tags: OMERO, Training
Content type: Videos, Tutorial, Collection
I2K 2024: clEsperanto - GPU-Accelerated Image Processing Library#
Stephane Rigaud, Robert Haase
Licensed BSD-3-CLAUSE
Course and material for the clEsperanto workshop presented at I2K 2024 @ Human Technopol (Milan, Italy). The workshop is an hands-on demo of the clesperanto project, focussing on how to use the library for users who want use GPU-acceleration for their Image Processing pipeline.
Tags: Clesperanto, Training, Bioimage Analysis, Notebooks, Workflow
Content type: Github Repository, Workshop, Tutorial, Notebook
I2K2024 workshop material - Lazy Parallel Processing and Visualization of Large Data with ImgLib2, BigDataViewer, the N5-API, and Spark#
Stephan Saalfeld, Tobias Pietzsch
Published None
Licensed APACHE-2.0
Tags: Training
Content type: Workshop, Notebook, Github Repository
Image Processing with Python#
Mark Meysenburg, Toby Hodges, Dominik Kutra, Erin Becker, David Palmquist, et al.
Licensed CC-BY-4.0
This lesson shows how to use Python and scikit-image to do basic image processing.
Tags: Segmentation, Bioimage Analysis, Training, Python, Scikit-Image, Image Segmentation
Content type: Tutorial, Workflow
Object Tracking and Track Analysis using TrackMate and CellTracksColab#
Joanna Pylvänäinen
Published None
Licensed GPL-3.0
I2K 2024 workshop materials for “Object Tracking and Track Analysis using TrackMate and CellTracksColab”
Tags: Bioimage Analysis, Training
Content type: Github Repository, Tutorial, Workshop, Slides
SWC/GCNU Software Skills#
Licensed CC-BY-4.0
Computational skills training at the UCL Sainsbury Wellcome Centre and Gatsby Computational Neuroscience Unit, delivered by members of the Neuroinformatics Unit.
Tags: Training
Content type: Collection, Online Course, Videos, Tutorial
Ten simple rules for making training materials FAIR#
Leyla Garcia, Bérénice Batut, Melissa L. Burke, Mateusz Kuzak, Fotis Psomopoulos, et al.
Published 2020-05-21
Licensed CC-BY-4.0
The authors offer trainers some simple rules, to help make their training materials FAIR, enabling others to find, (re)use, and adapt them.
Tags: Metadata, Bioinformatics, FAIR-Principles, Training
Content type: Publication
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007854
Ultrack I2K 2024 Workshop Materials#
Jordão Bragantini, Teun Huijben
Licensed BSD3-CLAUSE
Tags: Segmentation, Bioimage Analysis, Training
Content type: Workshop, Github Repository, Tutorial
Using Glittr.org to find, compare and re-use online training materials#
Geert van Geest, Yann Haefliger, Monique Zahn-Zabal, Patricia M. Palagi
Licensed CC-BY-4.0
Glittr.org is a platform that aggregates and indexes training materials on computational life sciences from public git repositories, making it easier for users to find, compare, and analyze these resources based on various metrics. By providing insights into the availability of materials, collaboration patterns, and licensing practices, Glittr.org supports adherence to the FAIR principles, benefiting the broader life sciences community.
Tags: Training, Bioimage Analysis, Research Data Management
Content type: Publication, Preprint
https://www.biorxiv.org/content/10.1101/2024.08.20.608021v1